| Taxonomy | ViralORFeome |
| Family | Virus | Viral proteins | Viral ORF cloned | Plasmids |
| Filoviridae | Lake Victoria marburgvirus | 2 | 5 | 13 |
| Filoviridae | Reston ebolavirus | 2 | 5 | 10 |
| Filoviridae | Zaire ebolavirus | 3 | 8 | 12 |
| Flaviviridae | Cell fusing agent virus | 1 | 1 | 6 |
| Flaviviridae | Dengue virus | 8 | 15 | 33 |
| Flaviviridae | Flavivirus sp. | 1 | 3 | 13 |
| Flaviviridae | Hepatitis C virus | 17 | 85 | 240 |
| Flaviviridae | Japanese encephalitis virus | 5 | 6 | 6 |
| Flaviviridae | Kyasanur forest disease virus | 2 | 3 | 14 |
| Flaviviridae | Meaban virus | 1 | 4 | 19 |
| Flaviviridae | Modoc virus | 1 | 4 | 18 |
| Flaviviridae | Tick-borne encephalitis virus | 1 | 3 | 17 |
| Flaviviridae | West Nile virus | 8 | 23 | 57 |
| Flaviviridae | Yellow fever virus | 9 | 16 | 52 |
| Hepadnaviridae | Hepatitis B virus | 6 | 14 | 24 |
| Herpesviridae | Human herpesvirus 4 | 6 | 12 | 24 |
| Orthomyxoviridae | Influenza A virus | 47 | 54 | 234 |
| Papillomaviridae | Human papillomavirus - 1 | 2 | 3 | 9 |
| Papillomaviridae | Human papillomavirus - 10 | 2 | 2 | 5 |
| Papillomaviridae | Human papillomavirus - 16 | 6 | 8 | 22 |
| Papillomaviridae | Human papillomavirus - 18 | 6 | 8 | 22 |
| Papillomaviridae | Human papillomavirus - 32 | 3 | 4 | 11 |
| Papillomaviridae | Human papillomavirus - 5 | 3 | 4 | 11 |
| Papillomaviridae | Human papillomavirus - 6 | 6 | 8 | 22 |
| Papillomaviridae | Human papillomavirus - 9 | 3 | 4 | 11 |
| Paramyxoviridae | Human parainfluenza virus 3 | 1 | 9 | 17 |
| Paramyxoviridae | Human respiratory syncytial virus | 1 | 3 | 0 |
| Paramyxoviridae | Measles virus | 23 | 84 | 195 |
| Paramyxoviridae | Mumps virus | 3 | 7 | 11 |
| Paramyxoviridae | Nipah virus | 3 | 10 | 28 |
| Paramyxoviridae | Sendai virus | 4 | 4 | 8 |
| Paramyxoviridae | Tioman virus | 3 | 7 | 17 |
| Picornaviridae | Encephalomyocarditis virus | 2 | 2 | 0 |
| Picornaviridae | Human enterovirus C | 1 | 3 | 6 |
| Picornaviridae | Theilovirus | 9 | 14 | 0 |
| Retroviridae | Equine infectious anemia virus | 5 | 15 | 39 |
| Retroviridae | Human immunodeficiency virus 1 | 3 | 6 | 0 |
| Retroviridae | Jaagsiekte sheep retrovirus | 5 | 14 | 53 |
| Retroviridae | Murine leukemia virus | 2 | 2 | 8 |
| Retroviridae | Primate T-lymphotropic virus 1 | 1 | 1 | 2 |
| Retroviridae | Primate T-lymphotropic virus 2 | 1 | 1 | 2 |
| Retroviridae | Rous sarcoma virus | 1 | 1 | 0 |
| Rhabdoviridae | Mokola virus | 1 | 1 | 0 |
| Rhabdoviridae | Rabies virus | 2 | 2 | 0 |
| Rhabdoviridae | Vesicular stomatitis Indiana virus | 2 | 2 | 0 |
| Togaviridae | Chikungunya virus | 12 | 37 | 52 |
| Togaviridae | Semliki forest virus | 9 | 9 | 27 |
| Togaviridae | Sindbis virus | 9 | 9 | 31 |
| 11 | 48 | 254 | 545 | 1401 |
