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| viral strain | name | clone ID | product | type | comments | plasmids |
|---|---|---|---|---|---|---|
| Kyasanur forest disease virus - 1176 | ALKV_.MatPep9_NP_775474.1 | 522 | non-structural protein NS3 | individual (2.0) | NS3_hel_alkv_clone_549 |  |
| ALKV_.MatPep9_NP_775474.0 | 510 | non-structural protein NS3 | individual (2.0) | ns3_full_alkv_clone_1862 | | |
| ALKV_.MatPep13_NP_775478.0 | 434 | RNA-dependent RNA polymerase | individual (2.0) | NS5_mt_alkv clone 61b | | |
| Cell fusing agent virus | CFAV.MatPep13_NP_776048.0 | 423 | RNA-dependent RNA polymerase | individual (2.0) | NS5 methyltransferase | |
| Chikungunya virus - 05-115 | CHIKV_05115.MatPep5_CAJ90470.0 | 721 | glycoprotein E1 | individual (2.0) |  | |
| CHIKV_05115.MatPep4_CAJ90470.0 | 828 | glycoprotein 6K | individual (2.0) | | ||
| CHIKV_05115.MatPep3_CAJ90470.0 | 824 | glycoprotein E2 | individual (2.0) | | ||
| CHIKV_05115.MatPep2_CAJ90470.0 | 718 | glycoprotein E3 | individual (2.0) | | ||
| CHIKV_05115.MatPep2_CAJ90469.9 | 741 | non-structural protein 2 | individual (2.0) | mutant nsP2 W549A | ||
| CHIKV_05115.MatPep2_CAJ90469.8 | 740 | non-structural protein 2 | individual (2.0) | mutant nsP2 - NLS region K->D | ||
| CHIKV_05115.MatPep2_CAJ90469.7 | 739 | non-structural protein 2 | individual (2.0) | mutant nsP2 del767 | ||
| CHIKV_05115.MatPep2_CAJ90469.6 | 738 | non-structural protein 2 | individual (2.0) | mutant nsP2 del672 | ||
| CHIKV_05115.MatPep2_CAJ90469.5 | 737 | non-structural protein 2 | individual (2.0) | mutant nsP2 del632 | ||
| CHIKV_05115.MatPep2_CAJ90469.4 | 736 | non-structural protein 2 | individual (2.0) | nsp2 mutant 166 term | ||
| CHIKV_05115.MatPep2_CAJ90469.3 | 735 | non-structural protein 2 | individual (2.0) | clone nsP2 131term | ||
| CHIKV_05115.MatPep2_CAJ90469.2 | 715 | non-structural protein 2 | individual (2.0) | | ||
| CHIKV_05115.MatPep2_CAJ90469.16 | 748 | non-structural protein 2 | electronic (0.0) | nsP2-C330 | ||
| CHIKV_05115.MatPep2_CAJ90469.15 | 747 | non-structural protein 2 | individual (2.0) | mutant nsP2 P718L | ||
| CHIKV_05115.MatPep2_CAJ90469.14 | 746 | non-structural protein 2 | individual (2.0) | mutant nsP2 P718G | ||
| CHIKV_05115.MatPep2_CAJ90469.13 | 745 | non-structural protein 2 | individual (2.0) | mutant nsP2 R606A | ||
| CHIKV_05115.MatPep2_CAJ90469.12 | 744 | non-structural protein 2 | individual (2.0) | mutant nsP2 H548A | ||
| CHIKV_05115.MatPep2_CAJ90469.11 | 743 | non-structural protein 2 | individual (2.0) | mutant nsP2 C478A | ||
| CHIKV_05115.MatPep2_CAJ90469.10 | 742 | non-structural protein 2 | individual (2.0) | mutant nsP2 K192N | ||
| CHIKV_05115.MatPep2_CAJ90468.0 | 716 | non-structural protein 4 | individual (2.0) | | ||
| CHIKV_05115.MatPep1_CAJ90470.0 | 717 | capsid | individual (2.0) | | ||
| CHIKV_05115.MatPep1_CAJ90469.0 | 821 | non-structural protein 1 | individual (2.0) | | ||
| CHIKV_05115.MatPep1_CAJ90468.0 | 823 | non-structural protein 3 | individual (2.0) | | ||
| CHIKV_05115.CAJ90470.0 | 722 | structural polyprotein | individual (2.0) | E3E2 polyprotein | ||
| Chikungunya virus - LR2006_OPY1 | CHIKV_REU.ABD95938.5 | 457 | structural polyprotein | individual (2.0) | E3E2_chik_la_reunion | |
| CHIKV_REU.ABD95938.4 | 456 | structural polyprotein | individual (2.0) | E1_chik_la_reunion | | |
| CHIKV_REU.ABD95938.3 | 455 | structural polyprotein | individual (2.0) | E3_chik_la_reunion | | |
| CHIKV_REU.ABD95938.2 | 454 | structural polyprotein | individual (2.0) | Core_chik_la_reunion | | |
| CHIKV_REU.ABD95938.1 | 453 | structural polyprotein | individual (2.0) | 6K_chik_la_reunion | | |
| CHIKV_REU.ABD95938.0 | 448 | structural polyprotein | individual (2.0) | E2_chik_la_reunion | | |
| CHIKV_REU.ABD95937.3 | 452 | nonstructural polyprotein | individual (2.0) | NS4_chik_la_reunion | | |
| CHIKV_REU.ABD95937.2 | 451 | nonstructural polyprotein | individual (2.0) | NS3_chik_la_reunion | | |
| CHIKV_REU.ABD95937.17 | 549 | nonstructural polyprotein | individual (2.0) | strain 06.27 | | |
| CHIKV_REU.ABD95937.16 | 548 | nonstructural polyprotein | individual (2.0) | strain 06.27 | | |
| CHIKV_REU.ABD95937.15 | 547 | nonstructural polyprotein | individual (2.0) | strain 06.27 | | |
| CHIKV_REU.ABD95937.1 | 450 | nonstructural polyprotein | individual (2.0) | NS2_chik_la_reunion | | |
| CHIKV_REU.ABD95937.0 | 449 | nonstructural polyprotein | individual (2.0) | NS1_chik_la_reunion | | |
| Dengue virus - D1/H/IMTSSA/98/606 | DENV_DJI.AAK60418.3 | 808 | polyprotein | individual (2.0) | NS3_pro_DV1 | |
| DENV_DJI.AAK60418.2 | 805 | polyprotein | individual (2.0) | NS3_hel_dv1_1850.2 | | |
| DENV_DJI.AAK60418.1 | 804 | polyprotein | individual (2.0) | NS3_full_dv1_1850 | | |
| DENV_DJI.AAK60418.0 | 422 | polyprotein | individual (2.0) | NS5_pol_denv1 clone 22 | | |
| Dengue virus - FGA/89 | DENV-1_FGA-89.AAF82039.2 | 118 | polyprotein | individual (2.0) | ectoM | |
| DENV-1_FGA-89.AAF82039.1 | 117 | polyprotein | individual (2.0) | prM-transloc | ||
| Dengue virus type 2 complete genome. | DENV2.MatPep5_AAA42941.0 | 891 | nonstructural protein 1 | electronic (0.0) | ||
| Dengue virus - Jamaica/N.1409 | DENV-2_JAM.AAA42942.0 | 119 | polyprotein | individual (2.0) | ectoM | |
| Dengue virus - DEN2/H/IMTSSA-MART/98-703 | DENV_2.MatPep7_AAG30730.0 | 428 | NS3 protein | individual (2.0) | NS3_hel_denv2 clone 132 | |
| Dengue virus - New Guinea C/PUO-218 hybrid | DENV_2_NG.AAC59274.4 | 849 | polyprotein | individual (2.0) | NS3_pro_dv2_NG | |
| DENV_2_NG.AAC59274.3 | 810 | polyprotein | individual (2.0) | NS4A_dv2_NG | | |
| DENV_2_NG.AAC59274.2 | 809 | polyprotein | individual (2.0) | NS2B dengue 2 - new guinea^M Tag His en Nterm | | |
| DENV_2_NG.AAC59274.0 | 806 | polyprotein | individual (2.0) | NS3hel_dv2_NG | | |
| Dengue virus - -D3/H/IMTSSA-SRI/2000/1266 | DENV-3_H87.AAM51537.0 | 143 | polyprotein | individual (2.0) | ectoM | |
| Dengue virus - Singapore 8976/95 | DENV-4_BUR.AAV31422.0 | 163 | polyprotein | individual (2.0) | ecto M, silent mismatch | |
| Equine infectious anemia virus clone EIAVuk | EIAV_uk.AAC03765.0 | 301 | rev | electronic (0.0) | rev | |
| EIAV_uk.AAC03764.0 | 296 | S2 protein | individual (2.0) | S2 | | |
| EIAV_uk.AAC03762.2 | 294 | Env | individual (2.0) | env gp45 (TM) | | |
| EIAV_uk.AAC03762.1 | 295 | Env | individual (2.0) | env gp90 (SU) | | |
| EIAV_uk.AAC03762.0 | 293 | Env | electronic (0.0) | env fl | ||
| EIAV_uk.AAC03761.4 | 292 | pol | individual (2.0) | pol INT | | |
| EIAV_uk.AAC03761.3 | 291 | pol | individual (2.0) | pol DU | | |
| EIAV_uk.AAC03761.2 | 290 | pol | individual (2.0) | pol RT | | |
| EIAV_uk.AAC03761.1 | 289 | pol | individual (2.0) | pol PRO | | |
| EIAV_uk.AAC03761.0 | 288 | pol | individual (2.0) | pol fl | | |
| EIAV_uk.AAC03760.4 | 287 | gag polyprotein | individual (2.0) | gag LP | | |
| EIAV_uk.AAC03760.3 | 286 | gag polyprotein | individual (2.0) | gag NC | | |
| EIAV_uk.AAC03760.2 | 285 | gag polyprotein | individual (2.0) | gag CA | | |
| EIAV_uk.AAC03760.1 | 284 | gag polyprotein | individual (2.0) | gag MA | | |
| EIAV_uk.AAC03760.0 | 283 | gag polyprotein | individual (2.0) | gag fl | | |
| Flavivirus cell fusing agent polyprotein gene | CFAV_.AAA48509.3 | 874 | cell fusing agent polyprotein | individual (2.0) | NS3_full_cfav_1854 | |
| CFAV_.AAA48509.2 | 444 | cell fusing agent polyprotein | individual (2.0) | NS5_pol_cfav clone 34 | | |
| CFAV_.AAA48509.1 | 430 | cell fusing agent polyprotein | individual (2.0) | NS3_hel_cfav clone 593 | | |
| Hepatitis B virus - ayr | HBV_AYR.NP_647606.0 | 889 | X protein | electronic (0.0) | ||
| Hepatitis B virus - -D12 | STHBVD12.ABO93436.1 | 786 | truncated polymerase | electronic (0.0) | ||
| STHBVD12.ABO93436.0 | 785 | truncated polymerase | in pool (1.0) | |||
| Hepatitis B virus - -EI00615 | STHBV.ABD36970.2 | 784 | preC/C protein | individual (2.0) | | |
| STHBV.ABD36970.0 | 733 | preC/C protein | individual (2.0) | core | | |
| STHBV.ABD36969.1 | 732 | X protein | individual (2.0) | small x | | |
| STHBV.ABD36969.0 | 731 | X protein | individual (2.0) | x | | |
| STHBV.ABD36968.0 | 730 | polymerase | in pool (1.0) | polymerase | | |
| STHBV.ABD36967.5 | 883 | envelope protein | individual (2.0) | preS2 | ||
| STHBV.ABD36967.4 | 882 | envelope protein | individual (2.0) | preS1S2 | ||
| STHBV.ABD36967.3 | 881 | envelope protein | individual (2.0) | preS1 | ||
| STHBV.ABD36967.2 | 729 | envelope protein | individual (2.0) | small (s) | | |
| STHBV.ABD36967.1 | 728 | envelope protein | in pool (1.0) | middle | | |
| STHBV.ABD36967.0 | 727 | envelope protein | in pool (1.0) | Large | | |
| Hepatitis C virus - BEN_RE | HCV_BENre.ABY75318.0 | 487 | nonstructural protein 5A | individual (2.0) |  | |
| Hepatitis C virus - DEL_GE | HCV_DELge.ABY75317.0 | 488 | nonstructural protein 5A | individual (2.0) | | |
| Hepatitis C virus - GOU_CL | HCV_GOUcl.ABY75320.0 | 485 | nonstructural protein 5A | individual (2.0) | | |
| Hepatitis C virus (isolate JFH-1) genomic RNA | HCV_JFH1.BAB32872.9 | 257 | polyprotein | individual (2.0) | p7 -mb | |
| HCV_JFH1.BAB32872.8 | 256 | polyprotein | individual (2.0) | p7 full length | | |
| HCV_JFH1.BAB32872.7 | 255 | polyprotein | individual (2.0) | E2 -mb | | |
| HCV_JFH1.BAB32872.6 | 254 | polyprotein | individual (2.0) | E2 full length | | |
| HCV_JFH1.BAB32872.4 | 252 | polyprotein | individual (2.0) | E1 full length | | |
| HCV_JFH1.BAB32872.3 | 251 | polyprotein | individual (2.0) | CORE D2 | | |
| HCV_JFH1.BAB32872.28 | 803 | polyprotein | individual (2.0) | NS2 -mb | | |
| HCV_JFH1.BAB32872.27 | 802 | polyprotein | individual (2.0) | E1 -mb | | |
| HCV_JFH1.BAB32872.26 | 798 | polyprotein | individual (2.0) | NS5B variant containing 1 adaptative mutation (H->L : posn) | | |
| HCV_JFH1.BAB32872.25 | 797 | polyprotein | individual (2.0) | NS5B -mb variant containing 1 adaptative mutation (H->L : pos34) | | |
| HCV_JFH1.BAB32872.24 | 172 | polyprotein | individual (2.0) | NS5B -mb (STOP is missing) | | |
| HCV_JFH1.BAB32872.23 | 170 | polyprotein | individual (2.0) | NS5B full length | | |
| HCV_JFH1.BAB32872.22 | 125 | polyprotein | individual (2.0) | NS5A D3 | | |
| HCV_JFH1.BAB32872.21 | 179 | polyprotein | individual (2.0) | NS5A D2 | | |
| HCV_JFH1.BAB32872.20 | 178 | polyprotein | individual (2.0) | NS5A D1 | | |
| HCV_JFH1.BAB32872.2 | 250 | polyprotein | individual (2.0) | CORE D1 | | |
| HCV_JFH1.BAB32872.19 | 261 | polyprotein | individual (2.0) | NS5A membrane anchor | | |
| HCV_JFH1.BAB32872.18 | 177 | polyprotein | individual (2.0) | NS5A without its membrane anchor | | |
| HCV_JFH1.BAB32872.17 | 124 | polyprotein | individual (2.0) | NS5A full length | | |
| HCV_JFH1.BAB32872.16 | 260 | polyprotein | individual (2.0) | NS4B | | |
| HCV_JFH1.BAB32872.15 | 176 | polyprotein | individual (2.0) | NS4A | | |
| HCV_JFH1.BAB32872.14 | 175 | polyprotein | individual (2.0) | NS3 helicase | | |
| HCV_JFH1.BAB32872.13 | 174 | polyprotein | individual (2.0) | NS3 protease | | |
| HCV_JFH1.BAB32872.12 | 173 | polyprotein | individual (2.0) | NS3 full length | | |
| HCV_JFH1.BAB32872.10 | 258 | polyprotein | individual (2.0) | NS2 full length | | |
| HCV_JFH1.BAB32872.1 | 123 | polyprotein | individual (2.0) | CORE -mb | | |
| HCV_JFH1.BAB32872.0 | 249 | polyprotein | individual (2.0) | CORE full length | | |
| Hepatitis C virus - RAV_PI | HCV_RAVpi.ABY75319.0 | 486 | nonstructural protein 5A | individual (2.0) | | |
| Hepatitis C virus - HC-J6CH | HCV_J6.AAF01178.9 | 241 | polyprotein | electronic (0.0) | p7 mature | |
| HCV_J6.AAF01178.8 | 240 | polyprotein | individual (2.0) | p7 fl | | |
| HCV_J6.AAF01178.5 | 246 | polyprotein | individual (2.0) | E1 -mb | | |
| HCV_J6.AAF01178.4 | 245 | polyprotein | electronic (0.0) | |||
| HCV_J6.AAF01178.3 | 238 | polyprotein | electronic (0.0) | |||
| HCV_J6.AAF01178.2 | 237 | polyprotein | individual (2.0) | CORE D1 | | |
| HCV_J6.AAF01178.15 | 814 | polyprotein | electronic (0.0) | E2 -mb | ||
| HCV_J6.AAF01178.14 | 813 | polyprotein | electronic (0.0) | E2 full lengths | ||
| HCV_J6.AAF01178.13 | 812 | polyprotein | electronic (0.0) | E1 full length | ||
| HCV_J6.AAF01178.12 | 378 | polyprotein | electronic (0.0) | |||
| HCV_J6.AAF01178.11 | 248 | polyprotein | individual (2.0) | NS2 mature | | |
| HCV_J6.AAF01178.1 | 244 | polyprotein | individual (2.0) | CORE -mb | | |
| HCV_J6.AAF01178.0 | 243 | polyprotein | individual (2.0) | CORE full length | | |
| Hepatitis C virus - RB-Con1 | HCV_con1.MatPep9_CAB46677.6 | 186 | NS5A phosphoprotein | individual (2.0) | | |
| HCV_con1.MatPep9_CAB46677.5 | 185 | NS5A phosphoprotein | individual (2.0) | | ||
| HCV_con1.MatPep9_CAB46677.4 | 184 | NS5A phosphoprotein | individual (2.0) | | ||
| HCV_con1.MatPep9_CAB46677.3 | 304 | NS5A phosphoprotein | individual (2.0) | | ||
| HCV_con1.MatPep9_CAB46677.2 | 303 | NS5A phosphoprotein | individual (2.0) | | ||
| HCV_con1.MatPep9_CAB46677.1 | 302 | NS5A phosphoprotein | individual (2.0) | | ||
| HCV_con1.MatPep9_CAB46677.0 | 8 | NS5A phosphoprotein | in pool (1.0) | |||
| HCV_con1.MatPep8_CAB46677.1 | 300 | NS4B protein | individual (2.0) | | ||
| HCV_con1.MatPep8_CAB46677.0 | 62 | NS4B protein | in pool (1.0) | |||
| HCV_con1.MatPep7_CAB46677.1 | 299 | NS3/4A proteinase cofactor | individual (2.0) | | ||
| HCV_con1.MatPep7_CAB46677.0 | 7 | NS3/4A proteinase cofactor | in pool (1.0) | |||
| HCV_con1.MatPep6_CAB46677.6 | 386 | NS3 proteinase/helicase | individual (2.0) | NS3 variant containing 2 adaptative mutation (E->G pos176/ : T->I pos254) | | |
| HCV_con1.MatPep6_CAB46677.5 | 235 | NS3 proteinase/helicase | individual (2.0) | fusion NS4A/NS3protease | | |
| HCV_con1.MatPep6_CAB46677.4 | 234 | NS3 proteinase/helicase | individual (2.0) | fusion NS4A/NS3full length | | |
| HCV_con1.MatPep6_CAB46677.3 | 298 | NS3 proteinase/helicase | individual (2.0) | NS3 helicase | | |
| HCV_con1.MatPep6_CAB46677.2 | 297 | NS3 proteinase/helicase | individual (2.0) | | ||
| HCV_con1.MatPep6_CAB46677.1 | 275 | NS3 proteinase/helicase | individual (2.0) | | ||
| HCV_con1.MatPep6_CAB46677.0 | 61 | NS3 proteinase/helicase | in pool (1.0) | |||
| HCV_con1.MatPep5_CAB46677.2 | 273 | NS2 proteinase | individual (2.0) | | ||
| HCV_con1.MatPep5_CAB46677.1 | 272 | NS2 proteinase | individual (2.0) | | ||
| HCV_con1.MatPep5_CAB46677.0 | 5 | NS2 proteinase | in pool (1.0) | |||
| HCV_con1.MatPep4_CAB46677.2 | 271 | p7 protein | individual (2.0) | | ||
| HCV_con1.MatPep4_CAB46677.1 | 270 | p7 protein | individual (2.0) | | ||
| HCV_con1.MatPep4_CAB46677.0 | 60 | p7 protein | in pool (1.0) | |||
| HCV_con1.MatPep3_CAB46677.2 | 269 | glycoprotein E2 | individual (2.0) | | ||
| HCV_con1.MatPep3_CAB46677.1 | 268 | glycoprotein E2 | individual (2.0) | | ||
| HCV_con1.MatPep3_CAB46677.0 | 44 | glycoprotein E2 | in pool (1.0) | |||
| HCV_con1.MatPep2_CAB46677.2 | 267 | glycoprotein E1 | individual (2.0) | | ||
| HCV_con1.MatPep2_CAB46677.1 | 266 | glycoprotein E1 | individual (2.0) | | ||
| HCV_con1.MatPep2_CAB46677.0 | 59 | glycoprotein E1 | in pool (1.0) | |||
| HCV_con1.MatPep1_CAB46677.6 | 265 | core protein | individual (2.0) | | ||
| HCV_con1.MatPep1_CAB46677.5 | 264 | core protein | individual (2.0) | | ||
| HCV_con1.MatPep1_CAB46677.4 | 263 | core protein | individual (2.0) | | ||
| HCV_con1.MatPep1_CAB46677.3 | 262 | core protein | individual (2.0) | | ||
| HCV_con1.MatPep1_CAB46677.2 | 9 | core protein | in pool (1.0) | |||
| HCV_con1.MatPep1_CAB46677.1 | 4 | core protein | in pool (1.0) | |||
| HCV_con1.MatPep10_CAB46677.2 | 188 | NS5B RNA dependant RNA polymerase | individual (2.0) | | ||
| HCV_con1.MatPep10_CAB46677.1 | 187 | NS5B RNA dependant RNA polymerase | individual (2.0) | | ||
| HCV_con1.MatPep10_CAB46677.0 | 63 | NS5B RNA dependant RNA polymerase | in pool (1.0) | |||
| HCV_con1.CAB46677.1 | 794 | polyprotein | individual (2.0) | NS4B variant containing 1 adaptative mutation (K->T pos135) | | |
| HCV_con1.CAB46677.0 | 793 | polyprotein | individual (2.0) | NS3 helicase variant containing 1 adaptative mutation (T->I : pos74) | | |
| Human herpesvirus 4 - B95-8 | HHV_4.YP_401677.0 | 852 | EBNA-1 | individual (2.0) | | |
| HHV_4.YP_401671.1 | 507 | EBNA-3C | individual (2.0) | | ||
| HHV_4.YP_401671.0 | 503 | EBNA-3C | individual (2.0) | | ||
| HHV_4.YP_401670.1 | 506 | EBNA-3B | individual (2.0) | | ||
| HHV_4.YP_401670.0 | 502 | EBNA-3B | individual (2.0) | | ||
| HHV_4.YP_401669.1 | 505 | EBNA-3A | individual (2.0) | | ||
| HHV_4.YP_401669.0 | 501 | EBNA-3A | individual (2.0) | | ||
| HHV_4.YP_401644.1 | 838 | EBNA-2 | individual (2.0) | EBNA2-125Cter | | |
| HHV_4.YP_401644.0 | 833 | EBNA-2 | individual (2.0) | EBNA2dAD | | |
| Human herpesvirus 4 - Raji | HHV_4_raji.ABU55428.2 | 509 | BSLF2/BMLF1 protein | individual (2.0) | | |
| HHV_4_raji.ABU55428.1 | 508 | BSLF2/BMLF1 protein | individual (2.0) | | ||
| HHV_4_raji.ABU55428.0 | 504 | BSLF2/BMLF1 protein | individual (2.0) | | ||
| Human immunodeficiency virus 1 - -HXB2 | HIV1_HXB2.AAB50262.0 | 800 | NULL | electronic (0.0) | ||
| HIV1_HXB2.AAB50258.0 | 799 | NULL | electronic (0.0) | |||
| Human immunodeficiency virus 1 - -NY5 | HIV-1_NY5.AAB04037.3 | 90 | NULL | electronic (0.0) | C-ter integrase | |
| HIV-1_NY5.AAB04037.2 | 89 | NULL | electronic (0.0) | Central domain integrase | ||
| HIV-1_NY5.AAB04037.1 | 88 | NULL | electronic (0.0) | N-ter integrase | ||
| HIV-1_NY5.AAB04037.0 | 87 | NULL | electronic (0.0) | |||
| Human papillomavirus - 1 | HPV_1.NP_040307.1 | 612 | E7 protein | individual (2.0) | | |
| HPV_1.NP_040307.0 | 583 | E7 protein | individual (2.0) | | ||
| HPV_1.NP_040305.0 | 624 | E6 protein | individual (2.0) | | ||
| Human papillomavirus - 16 | HPV_16.NP_041326.1 | 606 | transforming protein | individual (2.0) | | |
| HPV_16.NP_041326.0 | 582 | transforming protein | individual (2.0) | | ||
| HPV_16.NP_041325.0 | 622 | transforming protein | individual (2.0) | | ||
| Human papillomavirus - 5 | E2_HPV_5.NP_041368.0 | 615 | regulatory protein | individual (2.0) | | |
| Human papillomavirus ORFs. | HPV_39.AAA47053.0 | 630 | regulatory protein | individual (2.0) | | |
| HPV_39.AAA47051.1 | 610 | transforming protein | individual (2.0) | | ||
| HPV_39.AAA47051.0 | 594 | transforming protein | individual (2.0) | | ||
| HPV_39.AAA47050.0 | 625 | transforming protein | individual (2.0) | | ||
| Human papillomavirus type 11 (HPV-11) complete genome. | HPV_11.AAA46930.0 | 639 | regulatory protein | individual (2.0) | | |
| HPV_11.AAA46928.1 | 611 | transforming protein | individual (2.0) | | ||
| HPV_11.AAA46928.0 | 590 | transforming protein | individual (2.0) | | ||
| HPV_11.AAA46927.0 | 633 | transforming protein | individual (2.0) | | ||
| Human papillomavirus - 16 - -H995 | HPV_16_E2.AAD03824.0 | 636 | regulatory protein E2 | individual (2.0) | | |
| Human papillomavirus type 18 complete sequence. | HPV_18E6.AAP20594.0 | 637 | E6 protein | individual (2.0) | | |
| Human papillomavirus - 18 - -Qv15957 | HPV18_E2.ABP99755.0 | 640 | E2 | individual (2.0) | | |
| Human papillomavirus - 18 - P428 | HPV_18.ABR08464.1 | 607 | E7 protein | individual (2.0) | | |
| HPV_18.ABR08464.0 | 591 | E7 protein | individual (2.0) | | ||
| Human papillomavirus type 32 | HPV_32.NP_041804.0 | 628 | early protein | individual (2.0) | | |
| HPV_32.NP_041802.1 | 608 | early protein | individual (2.0) | | ||
| HPV_32.NP_041802.0 | 592 | early protein | individual (2.0) | | ||
| HPV_32.NP_041801.0 | 638 | early protein | individual (2.0) | | ||
| Human papillomavirus type 33 | HPV_33.AAA46961.0 | 629 | regulatory protein | individual (2.0) | | |
| HPV_33.AAA46959.1 | 609 | transforming protein | individual (2.0) | | ||
| HPV_33.AAA46959.0 | 593 | transforming protein | individual (2.0) | | ||
| HPV_33.AAA46958.0 | 626 | transforming protein | individual (2.0) | | ||
| Human papillomavirus type 3 genomic DNA. | HPV_3.CAA52472.0 | 635 | envelope protein | individual (2.0) | | |
| HPV_3.CAA52469.0 | 632 | early protein | individual (2.0) | | ||
| Human papillomavirus type 5 genes E6 and E7. | HPV_5.CAA52696.1 | 603 | NULL | individual (2.0) | | |
| HPV_5.CAA52696.0 | 588 | NULL | individual (2.0) | GenBank annotation not correct | | |
| HPV_5.CAA52695.0 | 623 | NULL | individual (2.0) | Annotation error of E6 and E7 in Genbank | | |
| Human papillomavirus - 6 - Human papillomavirus type 6vc | HPV_6.AAF00064.0 | 631 | E6 | individual (2.0) | | |
| Human papillomavirus - 6 - type 6b (HPV6b) | HPV_6b.NP_040297.1 | 604 | E7 protein | individual (2.0) | | |
| HPV_6b.NP_040297.0 | 589 | E7 protein | individual (2.0) | | ||
| Human papillomavirus type 6vc regulatory protein E2 (E2) gene | E2_HPV_6.AAD01724.0 | 616 | regulatory protein E2 | individual (2.0) | | |
| Human papillomavirus type 9 | HPV_9.NP_041864.0 | 627 | early protein | individual (2.0) | | |
| HPV_9.NP_041862.1 | 605 | early protein | individual (2.0) | | ||
| HPV_9.NP_041862.0 | 584 | early protein | individual (2.0) | | ||
| HPV_9.NP_041860.0 | 620 | early protein | individual (2.0) | | ||
| Human parainfluenza virus 3 - -DF042505 | hPIV3.ACD99698.9 | 868 | phosphoprotein | individual (2.0) | C-terminal region of the D protein | |
| hPIV3.ACD99698.8 | 867 | phosphoprotein | individual (2.0) | GRB2 binding region | | |
| hPIV3.ACD99698.7 | 866 | phosphoprotein | individual (2.0) | STAT1 binding region | | |
| hPIV3.ACD99698.6 | 865 | phosphoprotein | individual (2.0) | | ||
| hPIV3.ACD99698.5 | 862 | phosphoprotein | individual (2.0) | | ||
| hPIV3.ACD99698.4 | 861 | phosphoprotein | individual (2.0) | | ||
| hPIV3.ACD99698.3 | 859 | phosphoprotein | individual (2.0) | | ||
| hPIV3.ACD99698.2 | 858 | phosphoprotein | individual (2.0) | | ||
| hPIV3.ACD99698.0 | 856 | phosphoprotein | electronic (0.0) | |||
| Human poliovirus 2 clone S2R9 | PV_2.ABB36467.2 | 554 | polyprotein | individual (2.0) | | |
| PV_2.ABB36467.1 | 553 | polyprotein | individual (2.0) | | ||
| PV_2.ABB36467.0 | 552 | polyprotein | individual (2.0) | | ||
| Human respiratory syncytial virus - ATCC VR-26; Long | HRSV_ATTC.AAX23996.2 | 158 | polymerase L | electronic (0.0) | ||
| HRSV_ATTC.AAX23996.1 | 157 | polymerase L | electronic (0.0) | |||
| HRSV_ATTC.AAX23996.0 | 156 | polymerase L | electronic (0.0) | |||
| Primate T-lymphotropic virus 2 - -G12 | STLV-2.AAA45411.0 | 182 | NULL | individual (2.0) | Sequence fit with original clone from W.W. Hall | |
| Human T-lymphotropic virus 1 | HTLV-1.NP_057864.0 | 183 | p40 | individual (2.0) | Sequence match with original clone from W.C. Green | |
| Influenza A virus - A/Canterbury/02/2005-WithSEG | FLUAV_A_Canterbury_02_05_H3N2.ABI92385.0 | 406 | nonstructural protein 2 | individual (2.0) | NS2 A/Poitiers/484/05 H3N2 | |
| Influenza A virus - A/chicken/Guangdong/6/97 | FLUAV_A_Chicken_Guangdong_6_97_H9N2.AAY52649.0 | 408 | nonstructural protein 2 | individual (2.0) | NS2 A/Chicken/HK/69/97 H9N2 | |
| FLUAV_A_Chicken_Guangdong_6_97_H9N2.AAY52648.0 | 402 | nonstructural protein 1 | individual (2.0) | NS1NS1 A_Chicken_HK_69_97_ H9N2 | | |
| Influenza A virus - A/chicken/Kurgan/3/2005(H5N1)-WithSEG | chicken_Kurgan_3_2005_H5N1.ABC48796.0 | 411 | nonstructural protein 1 | individual (2.0) | NS1 Turkey H5N1 | |
| chicken_Kurgan_3_2005_H5N1.ABC48795.0 | 412 | nonstructural protein 2 | individual (2.0) | NS2 Turkey H5N1 | | |
| Influenza A virus - A/chicken/Netherlands/1/03 | FLUAV_A_Chicken_Netherlands_03_H7N7.AAR04369.0 | 398 | non-structural protein | individual (2.0) | NS1NS1 A_Chicken_Belgium_03_ H7N7 | |
| Influenza A virus - A/chicken/Scotland/1959-WithSEG | FLUAV_scot.ABI85106.0 | 334 | hemagglutinin | individual (2.0) | | |
| FLUAV_scot.ABI85109.0 | 333 | neuraminidase | individual (2.0) | | ||
| FLUAV_scot.ABI85107.0 | 330 | matrix protein 1 | individual (2.0) | | ||
| FLUAV_scot.ABI85112.0 | 332 | nonstructural protein 2 | individual (2.0) | | ||
| FLUAV_scot.ABI85111.0 | 331 | nonstructural protein 1 | individual (2.0) | | ||
| Influenza A virus - A/equine/Prague/1/1956-WithSEG | FLUAV_A_Equine_Prague_56_H7N7.ABB20504.0 | 403 | nonstructural protein 2 | individual (2.0) | A_Equine_Prague_56_H7N7 | |
| FLUAV_A_Equine_Prague_56_H7N7.ABB20503.0 | 399 | nonstructural protein 1 | individual (2.0) | | ||
| Influenza A virus - A/Hong Kong/1073/99 | FLUAV_A_HK_1073_99_H9N2.AAK49297.0 | 396 | nonstructural protein NS1 | individual (2.0) | | |
| Influenza A virus - A/Hong Kong/43/75-WithSEG | FLUAV.ABB04938.8 | 710 | polymerase PB2 | individual (2.0) | mutant K627E | |
| FLUAV.ABB04938.7 | 484 | polymerase PB2 | individual (2.0) | DPDE D701N/R702K | | |
| FLUAV.ABB04938.6 | 483 | polymerase PB2 | individual (2.0) | DPDE R702K | | |
| FLUAV.ABB04938.5 | 476 | polymerase PB2 | individual (2.0) | DPDE D701N | | |
| FLUAV.ABB04938.4 | 475 | polymerase PB2 | individual (2.0) | DPDE domain with NLS | | |
| FLUAV.ABB04938.3 | 474 | polymerase PB2 | individual (2.0) | 627 domain | | |
| FLUAV.ABB04938.2 | 473 | polymerase PB2 | individual (2.0) | compact cap-binding domain | | |
| FLUAV.ABB04938.1 | 472 | polymerase PB2 | individual (2.0) | longest cap-binding domain | | |
| Influenza A virus - A/migratory duck/Hong Kong/MPS180/2003 | FLUAV_A_migratory_duck_Hong_Kong_MPS180_2003_H4N6.ABQ84626.0 | 409 | nonstructural protein 2 | individual (2.0) | NS2 A/Chicken/Belgium/03 H7N7 | |
| Influenza A virus - A/New York/238/2005-WithSEG | FLUAV_A_NY_238_05_H3N2.ABB53668.0 | 410 | nonstructural protein 1 | individual (2.0) | NS1 A/Poitiers/484/05 H3N2 | |
| Influenza A virus - A/New York/8/2006-WithSEG | FLUAV_A_NY_8_06_H1N1.ABK79964.0 | 395 | nonstructural protein 1 | individual (2.0) | NS1_Lyon_712_06_H1N1 | |
| Influenza A virus - A/Puerto Rico/8/34-WithSEG | FLUAV_A_PR_8_34H1N1.NP_040985.0 | 281 | polymerase 1 | individual (2.0) | | |
| FLUAV_A_PR_8_34H1N1.ABD77683.0 | 617 | polymerase PB1 | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040986.0 | 282 | polymerase PA | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040982.0 | 278 | nucleocapsid protein | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040981.0 | 277 | neuraminidase | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040979.0 | 276 | matrix protein 2 | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040978.0 | 274 | matrix protein 1 | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040984.0 | 279 | nonstructural protein NS1 | individual (2.0) | | ||
| FLUAV_A_PR_8_34H1N1.NP_040983.0 | 280 | nonstructural protein NS2 | individual (2.0) | | ||
| Influenza A virus - -A/Puerto Rico/8/34/Mount Sinai-WithSEG | FLUAV_A_PR_8_34mount_sinaiH1N1.AAM75155.0 | 614 | polymerase PB2 | individual (2.0) | | |
| Influenza A virus - A/Qa/Thailand/57/2004 | FLUAV_A_Qa_Thailand_57_2004_H5N1.AAT73387.0 | 490 | nonstructural protein 2 | individual (2.0) | NS2 /Duck/Australia/348/83 H15N8 | |
| Influenza A virus - A/Turkey/651242/2006-WithSEG | FLUAV_A_Turkey_06_H5N1.ABQ58873.1 | 500 | polymerase PA | individual (2.0) | | |
| Influenza A virus - A/Viet Nam/1194/2004 | FLUAV_A_Viet_Nam_1194_2004_H5N1.AAT73394.0 | 393 | nonstructural protein 1 | individual (2.0) | A_VietNam_1194_2004_H5N1 | |
| FLUAV_A_Viet_Nam_1194_2004_H5N1.AAT73393.0 | 404 | nonstructural protein 2 | individual (2.0) | A_VietNam_1194_2004_H5N1 | | |
| FLUAV_A_Viet_Nam_1194_2004_H5N1.AAT74486.0 | 676 | polymerase acidic protein | individual (2.0) | | ||
| FLUAV_A_Viet_Nam_1194_2004_H5N1.AAT73495.0 | 677 | polymerase basic subunit 1 | individual (2.0) | | ||
| Influenza A virus - -A/Viet Nam/1196/04-WithSEG | FLUAV_A_VietNam_1196_2004_H5N1.AAR98821.0 | 400 | nonstructural protein 1 | individual (2.0) | NS1 A_Duck_Australia_348_83_H15N8 | |
| Influenza A virus - A/Wellington/14/2005-WithSEG | FLUAV_A_Wellington_14_05_H1N1.ABI92385.0 | 405 | nonstructural protein 2 | individual (2.0) | | |
| Influenza A virus - A/WSN/1933 TS61-WithSEG | FLUAV_A_WSN_TS61.ABF47965.0 | 340 | polymerase PB2 | individual (2.0) | | |
| FLUAV_A_WSN_TS61.ABF47964.0 | 337 | PB1-F2 protein | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47963.0 | 341 | polymerase PB1 | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47962.0 | 342 | polymerase PA | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47955.0 | 348 | hemagglutinin | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47959.0 | 345 | nucleocapsid protein | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47958.0 | 339 | neuraminidase | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47957.0 | 347 | matrix protein 2 | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47956.0 | 346 | matrix protein 1 | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47961.0 | 344 | nonstructural protein 2 | individual (2.0) | | ||
| FLUAV_A_WSN_TS61.ABF47960.0 | 343 | nonstructural protein 1 | individual (2.0) | | ||
| Japanese encephalitis SA-14 virus | JEV_SA14.MatPep2_AAA46249.0 | 895 | nonstructural protein | electronic (0.0) | ||
| JEV_SA14.AAA46248.1 | 894 | NULL | electronic (0.0) | NS1 prime | ||
| JEV_SA14.AAA46248.0 | 893 | NULL | electronic (0.0) | |||
| Japanese encephalitis virus - Ling | JEV_.MatPep8_AAL77444.0 | 514 | nonstructural protein NS3 | individual (2.0) | NS3_hel_jev_clone_843 | |
| JEV_.AAL77444.0 | 875 | polyprotein | individual (2.0) | NS5_MT_JEV_842.1 | | |
| Japanese encephalitis virus - SA14 | JEV_SA.BAA14218.0 | 164 | polyprotein | individual (2.0) | ectoM, silent mismatch | |
| West Nile virus - MRM61C | KUNV_.MatPep8_BAA00176.2 | 512 | NS3 | individual (2.0) | NS3_pro_kunv_clone_1874 | |
| KUNV_.MatPep8_BAA00176.1 | 433 | NS3 | individual (2.0) | NS3_hel_kunv clone 1096 | | |
| KUNV_.MatPep8_BAA00176.0 | 429 | NS3 | individual (2.0) | NS3_hel_kunv clone 595 | | |
| KUNV_.MatPep11_BAA00176.2 | 517 | NS5 | individual (2.0) | NS5_pol_kunv_clone_sp34 | | |
| KUNV_.MatPep11_BAA00176.1 | 516 | NS5 | individual (2.0) | NS5_mt_kunv_clone_859 | | |
| Lake Victoria marburgvirus - Musoke | MARV-Mus.ABA87129.0 | 309 | VP24 | individual (2.0) | | |
| MARV-Mus.ABA87124.3 | 308 | nucleoprotein | individual (2.0) | NP D3 | | |
| MARV-Mus.ABA87124.2 | 307 | nucleoprotein | individual (2.0) | NP D2 | | |
| MARV-Mus.ABA87124.1 | 306 | nucleoprotein | individual (2.0) | NP D1 | | |
| MARV-Mus.ABA87124.0 | 305 | nucleoprotein | individual (2.0) | | ||
| Meaban virus from France polyprotein gene | MEAV.ABB90668.3 | 519 | polyprotein | individual (2.0) | NS3_hel_meav_clone_631.1 | |
| MEAV.ABB90668.2 | 511 | polyprotein | individual (2.0) | NS5_pol_meav_clone_1870 | | |
| MEAV.ABB90668.1 | 426 | polyprotein | individual (2.0) | NS5_mt_meav clone 84 | | |
| MEAV.ABB90668.0 | 425 | polyprotein | individual (2.0) | NS5_mt_meav clone 83 | | |
| Measles virus - Ichinose-B95a | MeV_Ichi.NP_056924.1 | 557 | large polymerase | in pool (1.0) | | |
| MeV_Ichi.NP_056923.1 | 228 | hemagglutinin protein | individual (2.0) | | ||
| MeV_Ichi.NP_056923.0 | 230 | hemagglutinin protein | in pool (1.0) | | ||
| MeV_Ichi.NP_056922.1 | 227 | fusion protein | individual (2.0) | | ||
| MeV_Ichi.NP_056922.0 | 229 | fusion protein | in pool (1.0) | | ||
| MeV_Ichi.NP_056921.0 | 226 | matrix protein | individual (2.0) | | ||
| MeV_Ichi.NP_056920.0 | 197 | nonstructural C protein | individual (2.0) | C Protein | | |
| MeV_Ichi.NP_056919.9 | 569 | phosphoprotein | individual (2.0) | Vtail with pept 11 AA STAT1 binding | | |
| MeV_Ichi.NP_056919.8 | 568 | phosphoprotein | individual (2.0) | Tail-Pcore without pept 11 AA STAT1 binding | | |
| MeV_Ichi.NP_056919.7 | 567 | phosphoprotein | individual (2.0) | Tail-Pcore + pept 11 AA STAT1 binding | | |
| MeV_Ichi.NP_056919.6 | 566 | phosphoprotein | individual (2.0) | P1-327 without pept 11 AA STAT1 binding | | |
| MeV_Ichi.NP_056919.5 | 550 | phosphoprotein | individual (2.0) | P1-109 + pept 11 AA STAT1 binding | | |
| MeV_Ichi.NP_056919.4 | 198 | phosphoprotein | individual (2.0) | | ||
| MeV_Ichi.NP_056919.3 | 195 | phosphoprotein | individual (2.0) | V Protein | | |
| MeV_Ichi.NP_056919.21 | 600 | phosphoprotein | individual (2.0) | Vtail-Ichinose-H232A | | |
| MeV_Ichi.NP_056919.20 | 599 | phosphoprotein | individual (2.0) | Vtail-Ichinose-mut-R233A | | |
| MeV_Ichi.NP_056919.2 | 199 | phosphoprotein | individual (2.0) | | ||
| MeV_Ichi.NP_056919.19 | 598 | phosphoprotein | individual (2.0) | Vtail-Ichinose-mut-R234A | | |
| MeV_Ichi.NP_056919.18 | 597 | phosphoprotein | individual (2.0) | Vtail-Ichinose-mut-E235A | | |
| MeV_Ichi.NP_056919.17 | 586 | phosphoprotein | individual (2.0) | V-Ichi-mutR264A | | |
| MeV_Ichi.NP_056919.16 | 576 | phosphoprotein | individual (2.0) | pept 156 AA STAT2 binding | | |
| MeV_Ichi.NP_056919.14 | 574 | phosphoprotein | individual (2.0) | pept 150 AA STAT2 binding | | |
| MeV_Ichi.NP_056919.11 | 571 | phosphoprotein | individual (2.0) | pept 11 AA STAT1 bnding | | |
| MeV_Ichi.NP_056919.10 | 570 | phosphoprotein | individual (2.0) | Vtail without pept 11 AA STAT1 binding | | |
| MeV_Ichi.NP_056919.1 | 196 | phosphoprotein | individual (2.0) | | ||
| MeV_Ichi.NP_056919.0 | 194 | phosphoprotein | in pool (1.0) | | ||
| MeV_Ichi.NP_056918.0 | 225 | nucleocapsid protein | in pool (1.0) | | ||
| Measles virus - Measles virus strain Edmonston | MeV_edmonston.AAF85681.1 | 55 | hemagglutinin | in pool (1.0) | ||
| MeV_edmonston.AAF85681.0 | 18 | hemagglutinin | individual (2.0) | Similar to Schwarz.AAF85705.1 | ||
| MeV_edmonston.AAF85680.6 | 23 | fusion protein | in pool (1.0) | |||
| MeV_edmonston.AAF85680.5 | 49 | fusion protein | individual (2.0) | |||
| MeV_edmonston.AAF85680.4 | 35 | fusion protein | individual (2.0) | Billeter clone Z66517 used as a template | ||
| MeV_edmonston.AAF85680.3 | 17 | fusion protein | individual (2.0) | Billeter clone Z66517 used as a template | ||
| MeV_edmonston.AAF85680.2 | 50 | fusion protein | individual (2.0) | Similar to Schwarz.AAF85704.4 | ||
| MeV_edmonston.AAF85680.1 | 36 | fusion protein | individual (2.0) | Billeter clone Z66517 used as a template | ||
| MeV_edmonston.AAF85680.0 | 48 | fusion protein | individual (2.0) | Billeter clone Z66517 used as a template | ||
| MeV_edmonston.AAF85677.0 | 43 | V protein | in pool (1.0) | |||
| MeV_edmonston.AAF85675.4 | 34 | nucleocapsid protein | individual (2.0) | Similar to MV_EdmZag.AAR32652.4 | ||
| MeV_edmonston.AAF85675.3 | 3 | nucleocapsid protein | individual (2.0) | Similar to MV_EdmZag.AAR32652.0 | ||
| MeV_edmonston.AAF85675.2 | 236 | nucleocapsid protein | individual (2.0) | | ||
| MeV_edmonston.AAF85675.1 | 220 | nucleocapsid protein | individual (2.0) | | ||
| MeV_edmonston.AAF85675.0 | 219 | nucleocapsid protein | individual (2.0) | | ||
| Measles virus - Measles virus strain Edmonston (Schwarz vaccine) | MeV_schwarz.AAF85706.3 | 231 | large protein | in pool (1.0) | | |
| MeV_schwarz.AAF85705.2 | 16 | hemagglutinin | in pool (1.0) | |||
| MeV_schwarz.AAF85705.1 | 15 | hemagglutinin | in pool (1.0) | |||
| MeV_schwarz.AAF85705.0 | 14 | hemagglutinin | in pool (1.0) | |||
| MeV_schwarz.AAF85704.5 | 12 | fusion protein | in pool (1.0) | |||
| MeV_schwarz.AAF85704.4 | 13 | fusion protein | in pool (1.0) | |||
| MeV_schwarz.AAF85704.3 | 11 | fusion protein | in pool (1.0) | |||
| MeV_schwarz.AAF85704.2 | 10 | fusion protein | in pool (1.0) | |||
| MeV_schwarz.AAF85704.1 | 40 | fusion protein | in pool (1.0) | |||
| MeV_schwarz.AAF85704.0 | 39 | fusion protein | in pool (1.0) | |||
| MeV_schwarz.AAF85703.1 | 75 | matrix protein | in pool (1.0) | | ||
| MeV_schwarz.AAF85703.0 | 33 | matrix protein | in pool (1.0) | |||
| MeV_schwarz.AAF85702.1 | 71 | C protein | individual (2.0) | | ||
| MeV_schwarz.AAF85702.0 | 32 | C protein | in pool (1.0) | |||
| MeV_schwarz.AAF85701.8 | 587 | V protein | individual (2.0) | V-Schwarz-mut-D127A | | |
| MeV_schwarz.AAF85701.7 | 562 | V protein | individual (2.0) | V-Schwarz-mut110-Y>H | | |
| MeV_schwarz.AAF85701.6 | 72 | V protein | individual (2.0) | | ||
| MeV_schwarz.AAF85701.5 | 107 | V protein | individual (2.0) | | ||
| MeV_schwarz.AAF85700.8 | 596 | phosphoprotein | individual (2.0) | Vtail-Schwarz-mut-W240A | | |
| MeV_schwarz.AAF85700.7 | 595 | phosphoprotein | individual (2.0) | Vtail-Schwarz-mut-W250A | | |
| MeV_schwarz.AAF85700.6 | 561 | phosphoprotein | in pool (1.0) | Pcore-Schwarz-mut110-Y>H | | |
| MeV_schwarz.AAF85700.4 | 108 | phosphoprotein | individual (2.0) | Ptail-Schwarz | ||
| MeV_schwarz.AAF85700.3 | 74 | phosphoprotein | individual (2.0) | Pcore-Schwarz | | |
| MeV_schwarz.AAF85700.2 | 73 | phosphoprotein | individual (2.0) | | ||
| MeV_schwarz.AAF85700.0 | 30 | phosphoprotein | in pool (1.0) | |||
| MeV_schwarz.AAF85699.4 | 843 | nucleocapsid protein | electronic (0.0) | Box2 | ||
| MeV_schwarz.AAF85699.3 | 29 | nucleocapsid protein | individual (2.0) | | ||
| MeV_schwarz.AAF85699.2 | 2 | nucleocapsid protein | individual (2.0) | | ||
| MeV_schwarz.AAF85699.1 | 56 | nucleocapsid protein | in pool (1.0) | |||
| MeV_schwarz.AAF85699.0 | 38 | nucleocapsid protein | in pool (1.0) | |||
| Measles virus - -EZD22 | MeV_EdmZag.AAR32652.4 | 6 | nucleocapsid protein | individual (2.0) | Silent mismatch position 516 | |
| MeV_EdmZag.AAR32652.3 | 47 | nucleocapsid protein | individual (2.0) | Similar to meas_edmon.AAF85675.1 | ||
| MeV_EdmZag.AAR32652.2 | 31 | nucleocapsid protein | individual (2.0) | Similar to meas_edmon.AAF85675.0 | ||
| MeV_EdmZag.AAR32652.1 | 46 | nucleocapsid protein | individual (2.0) | Identical to clone meas_edmon.AAF85675.2 | ||
| MeV_EdmZag.AAR32652.0 | 28 | nucleocapsid protein | individual (2.0) | Silent mismatch position 516 | ||
| Measles virus - G954 | MeV_G954.ABO69701.2 | 556 | virulence factor | individual (2.0) | | |
| MeV_G954.ABO69701.1 | 491 | virulence factor | individual (2.0) | | ||
| MeV_G954.ABO69701.0 | 469 | virulence factor | individual (2.0) | | ||
| MeV_G954.ABO69700.0 | 461 | virulence factor | individual (2.0) | | ||
| MeV_G954.ABO69699.4 | 470 | phosphoprotein | individual (2.0) | | ||
| MeV_G954.ABO69699.3 | 468 | phosphoprotein | individual (2.0) | | ||
| MeV_G954.ABO69699.1 | 464 | phosphoprotein | individual (2.0) | | ||
| Encephalomyocarditis virus - medium plague-M | EMCV.MatPep7_AAA46547.0 | 211 | protein 2C | electronic (0.0) | ||
| EMCV.MatPep5_AAA46547.0 | 210 | protein 2A | electronic (0.0) | |||
| Modoc virus - M544 | MODV.CAC82912.3 | 513 | polyprotein | individual (2.0) | NS3_pro_modv_clone_1878 | |
| MODV.CAC82912.2 | 442 | polyprotein | individual (2.0) | NS3_hel_modv clone 1097 | | |
| MODV.CAC82912.1 | 441 | polyprotein | individual (2.0) | NS5_pol_modv clone 47 | | |
| MODV.CAC82912.0 | 440 | polyprotein | individual (2.0) | NS5_mt_modv clone 631.2 | | |
| Mokola virus | MOKV.YP_142352.0 | 81 | M2 protein | individual (2.0) | ||
| Moloney murine leukemia virus | MoMLV.MatPep1_AAB59942.0 | 312 | protein p15 | individual (2.0) | gag MA | |
| MoMLV.AAB59942.0 | 313 | NULL | individual (2.0) | gag 1 mut silencieuse (T777C) | | |
| Mumps virus - -Sophie | MUV_Sophie.ABG48765.1 | 621 | I protein | individual (2.0) | ||
| MUV_Sophie.ABG48765.0 | 492 | I protein | individual (2.0) | | ||
| MUV_Sophie.ABG48764.2 | 496 | P protein | individual (2.0) | |||
| MUV_Sophie.ABG48764.1 | 495 | P protein | individual (2.0) | |||
| MUV_Sophie.ABG48764.0 | 494 | P protein | individual (2.0) | | ||
| MUV_Sophie.ABG48763.1 | 498 | V protein | individual (2.0) | |||
| MUV_Sophie.ABG48763.0 | 493 | V protein | individual (2.0) | | ||
| Nipah virus | NiV.NP_112024.0 | 223 | C protein | individual (2.0) | | |
| NiV.NP_112023.6 | 841 | V protein | individual (2.0) | | ||
| NiV.NP_112023.5 | 840 | V protein | individual (2.0) | | ||
| NiV.NP_112023.4 | 826 | V protein | individual (2.0) | | ||
| NiV.NP_112023.2 | 767 | V protein | individual (2.0) | W | | |
| NiV.NP_112023.1 | 193 | V protein | individual (2.0) | Vtail | | |
| NiV.NP_112022.4 | 192 | phosphoprotein | individual (2.0) | Wtail | | |
| NiV.NP_112022.2 | 224 | phosphoprotein | individual (2.0) | | ||
| NiV.NP_112022.1 | 152 | phosphoprotein | individual (2.0) | | ||
| NiV.NP_112022.0 | 221 | phosphoprotein | in pool (1.0) | | ||
| Ovine pulmonary adenocarcinoma virus | JSRV_21.NP_041188.4 | 846 | envelope protein | individual (2.0) | Env Senv; +21 nt at 5'-term | |
| JSRV_21.NP_041188.3 | 358 | envelope protein | individual (2.0) | Env CT | | |
| JSRV_21.NP_041188.1 | 351 | envelope protein | individual (2.0) | Env Tm; 1 mut: C->S at position 24 | | |
| JSRV_21.NP_041188.0 | 82 | envelope protein | individual (2.0) | Pol RT,beginning at nt 2991 and not at 3108 : it mis 117 first nt 845 Enveloppe full-length, + 27 nt at 5'-term | | |
| JSRV_21.NP_041187.2 | 446 | hypothetical protein | individual (2.0) | protein X | | |
| JSRV_21.NP_041186.4 | 845 | pol protein | individual (2.0) | | ||
| JSRV_21.NP_041186.3 | 447 | pol protein | individual (2.0) | Pol integrase | | |
| JSRV_21.NP_041186.1 | 350 | pol protein | individual (2.0) | Pol RNase H | | |
| JSRV_21.NP_041186.0 | 84 | pol protein | individual (2.0) | Pol full-length, beginning at nt 2829 (as annotated in NCBI) and not at 3108 | | |
| JSRV_21.NP_041185.1 | 435 | neutral protease large subunit | individual (2.0) | | ||
| JSRV_21.NP_041184.5 | 349 | gag protein | individual (2.0) | Gag Nucleocapsid | | |
| JSRV_21.NP_041184.4 | 162 | gag protein | individual (2.0) | Gag Capsid | | |
| JSRV_21.NP_041184.2 | 161 | gag protein | individual (2.0) | Gag Matrix | | |
| JSRV_21.NP_041184.0 | 86 | gag protein | individual (2.0) | Gag full-length | | |
| Rabies virus | RABV.NP_056795.0 | 45 | M2 protein | individual (2.0) | ||
| Rabies virus (strain SAD B19) | RABV_SADB19.AAA47201.0 | 70 | NULL | individual (2.0) | ||
| Reston ebolavirus - Pennsylvania | REBOV.AAV48580.0 | 322 | membrane-associated protein VP24 | individual (2.0) | VP24 | |
| REBOV.AAV48574.3 | 320 | nucleoprotein | individual (2.0) | NP D3 | | |
| REBOV.AAV48574.2 | 321 | nucleoprotein | individual (2.0) | NP D2 | | |
| REBOV.AAV48574.1 | 319 | nucleoprotein | individual (2.0) | NP D1 | | |
| REBOV.AAV48574.0 | 318 | nucleoprotein | individual (2.0) | NP | | |
| Rous sarcoma virus - Prague | RSV-Pr-ALRCG.AAB59935.0 | 20 | src-p60 phosphoprotein | electronic (0.0) | ||
| Semliki forest virus - -L10 | SFVL4.MatPep4_CAB62256.0 | 773 | nonstructural protein nsP4 | in pool (1.0) | | |
| SFVL4.MatPep3_CAB62256.0 | 772 | nonstructural protein nsP3 | in pool (1.0) | | ||
| SFVL4.MatPep2_CAB62256.0 | 771 | nonstructural protein nsP2 | in pool (1.0) | | ||
| SFVL4.CAB62256.0 | 758 | polyprotein nsP1234 | in pool (1.0) | | ||
| Semliki forest virus - L10 | SFVL10.MatPep4_AAM64227.0 | 756 | 6 kDa protein | in pool (1.0) | | |
| SFVL10.MatPep3_AAM64227.1 | 818 | E2 protein | in pool (1.0) | | ||
| SFVL10.MatPep2_AAM64227.0 | 754 | E3 protein | in pool (1.0) | | ||
| SFVL10.MatPep1_AAM64227.0 | 801 | capsid protein | in pool (1.0) | | ||
| SFVL10.AAM64227.1 | 775 | structural polyprotein | in pool (1.0) | | ||
| Sendai virus - Ohita-M1 | SeVM1.NP_056875.0 | 873 | Y1 protein | individual (2.0) | | |
| SeVM1.NP_056874.0 | 896 | C protein | individual (2.0) | ACCGGT insert (69) A ->G (125) | | |
| Sendai virus M (matrix or membrane protein) gene | SeV_.AAA47811.0 | 545 | NULL | in pool (1.0) | | |
| Sendai virus - mutant T-5 revertant | SeV.AAB06295.2 | 232 | L protein | in pool (1.0) | ||
| Sindbis virus (hrsp and wild-type strains) complete genome. | SINV.MatPep5_AAA96976.1 | 783 | e-1 structural protein | in pool (1.0) | | |
| SINV.MatPep4_AAA96976.0 | 131 | 6k structural protein | in pool (1.0) | | ||
| SINV.MatPep3_AAA96976.1 | 782 | e-2 structural protein | in pool (1.0) | | ||
| SINV.MatPep3_AAA96975.1 | 777 | nsp3 nonstructural protein | in pool (1.0) | | ||
| SINV.MatPep2_AAA96976.0 | 130 | e-3 structural protein | in pool (1.0) | | ||
| SINV.MatPep2_AAA96975.0 | 128 | nsp2 nonstructural protein | in pool (1.0) | mutation A->g (2750) | | |
| SINV.MatPep1_AAA96975.1 | 776 | nsp1 nonstructural protein | in pool (1.0) | | ||
| SINV.MatPep1_AAA96974.0 | 129 | nsp4 nonstructural protein (putative start); putative | in pool (1.0) | | ||
| SINV.AAA96976.0 | 781 | NULL | in pool (1.0) | | ||
| Theiler murine encephalomyelitis virus | TLV.MatPep8_AAA47928.0 | 97 | protein 3A | individual (2.0) | ||
| TLV.MatPep7_AAA47928.0 | 103 | protein 2C | in pool (1.0) | 1 aa difference (S269P) with the genbank sequence | ||
| TLV.MatPep5_AAA47928.0 | 94 | protein 2A | individual (2.0) | |||
| TLV.AAA47928.4 | 102 | NULL | in pool (1.0) | 2 aa differences (V42F, S396P) with the genbank sequence | ||
| TLV.AAA47928.3 | 95 | NULL | individual (2.0) | 1 aa difference (S53L) with the genbank protein sequence | ||
| TLV.AAA47928.2 | 96 | NULL | individual (2.0) | 1 aa difference (S96L) with the genbank protein sequence | ||
| TLV.AAA47928.1 | 93 | NULL | individual (2.0) | |||
| Theilovirus - GDVII | TLV_GDVII.NP_040350.3 | 848 | viral polyprotein | in pool (1.0) | ||
| TLV_GDVII.NP_040350.2 | 99 | viral polyprotein | individual (2.0) | |||
| TLV_GDVII.NP_040350.1 | 100 | viral polyprotein | in pool (1.0) | |||
| TLV_GDVII.MatPep_NP_740432.0 | 105 | protein 3A | individual (2.0) | |||
| TLV_GDVII.MatPep_NP_740431.0 | 104 | protein 2C | in pool (1.0) | |||
| TLV_GDVII.MatPep_NP_740428.0 | 101 | protein 2A | individual (2.0) | 1 aa difference (A52E) with the genbank protein sequence | ||
| TLV_GDVII.MatPep_NP_740423.0 | 98 | leader peptide | individual (2.0) | |||
| Tick-borne encephalitis virus - 263 | TBEV.AAA86739.2 | 439 | polyprotein | individual (2.0) | NS5_pol_tbev clone 94b | |
| TBEV.AAA86739.1 | 438 | polyprotein | individual (2.0) | NS5_mt_tbev clone 94a | | |
| TBEV.AAA86739.0 | 427 | polyprotein | individual (2.0) | NS5_full_tbev clone 94 | | |
| Tioman virus | Tioman.NP_665867.2 | 819 | W protein | individual (2.0) | | |
| Tioman.NP_665867.1 | 218 | W protein | individual (2.0) | | ||
| Tioman.NP_665866.1 | 217 | V protein | individual (2.0) | | ||
| Tioman.NP_665865.5 | 842 | phosphoprotein | individual (2.0) | | ||
| Tioman.NP_665865.4 | 768 | phosphoprotein | individual (2.0) | | ||
| Tioman.NP_665865.2 | 213 | phosphoprotein | individual (2.0) | | ||
| Tioman.NP_665865.1 | 216 | phosphoprotein | individual (2.0) | | ||
| Vesicular stomatitis Indiana virus | VSIV.NP_041714.0 | 1 | matrix (M) protein | individual (2.0) | ||
| Vesicular stomatitis Indiana virus | VSIV_Ind_Wt.AAA48371.2 | 233 | NULL | in pool (1.0) | ||
| West Nile virus - -WN NJ 2000 MQ5488 | WNV_NJ.AAM81750.0 | 647 | polyprotein precursor | individual (2.0) | NS5_pol_wnv_sp32 | |
| West Nile virus - NY99-385-99 | WNV_NY99.MatPep4_YP_001527881.0 | 892 | nonstructural protein 1 | electronic (0.0) | ||
| West Nile virus - IS-98 STD1 | WNV_IS98.AAL87234.9 | 67 | polyprotein precursor | electronic (0.0) | | |
| WNV_IS98.AAL87234.8 | 66 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.7 | 65 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.6 | 64 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.5 | 27 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.4 | 26 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.3 | 58 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.2 | 25 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.10 | 68 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.1 | 57 | polyprotein precursor | electronic (0.0) | | ||
| WNV_IS98.AAL87234.0 | 24 | polyprotein precursor | electronic (0.0) | | ||
| West Nile virus - NY99-flamingo382-99 | WNV_NY.AAF20092.0 | 120 | polyprotein precursor | individual (2.0) | ectoM | |
| West Nile virus - PaAn001 | WNV_IMAP.AAQ00998.0 | 877 | polyprotein | individual (2.0) | NS3_PRO_WNV_1690.1 | |
| West Nile virus - Rabensburg-97-103 | WNV.AAW81711.2 | 879 | polyprotein precursor | individual (2.0) | NS3_hel_WNV_885 | |
| WNV.AAW81711.1 | 432 | polyprotein precursor | individual (2.0) | NS3_hel_wnv clone 885 | | |
| WNV.AAW81711.0 | 431 | polyprotein precursor | individual (2.0) | NS3_full_wnv clone 883 | | |
| Yellow fever virus - 17D-204-South Africa vaccine | YFV_.AAC35906.0 | 520 | polyprotein | individual (2.0) | NS3_hel_YF_clone_140 | |
| Yellow fever virus - 17D vaccine strain | YFV_17D.MatPep9_CAA27332.0 | 820 | putative non-structural protein NS4a | in pool (1.0) | | |
| YFV_17D.MatPep4_CAA27332.0 | 126 | envelope protein | in pool (1.0) | | ||
| YFV_17D.MatPep3_CAA27332.0 | 146 | M protein | in pool (1.0) | | ||
| YFV_17D.MatPep2_CAA27332.0 | 145 | M protein precursor | in pool (1.0) | | ||
| YFV_17D.MatPep1_CAA27332.1 | 144 | capsid protein | in pool (1.0) | | ||
| YFV_17D.MatPep1_CAA27332.0 | 141 | capsid protein | in pool (1.0) | | ||
| YFV_17D.CAA27332.9 | 770 | polyprotein precursor | in pool (1.0) | | ||
| YFV_17D.CAA27332.8 | 764 | polyprotein precursor | in pool (1.0) | NS2a | | |
| YFV_17D.CAA27332.7 | 335 | polyprotein precursor | in pool (1.0) | NS5 mutation pos. 60 D to G | | |
| YFV_17D.CAA27332.4 | 151 | polyprotein precursor | in pool (1.0) | non-structural protein NS3 | | |
| YFV_17D.CAA27332.3 | 150 | polyprotein precursor | in pool (1.0) | non-structural protein NS2b | | |
| YFV_17D.CAA27332.1 | 148 | polyprotein precursor | in pool (1.0) | non-structural protein NS1 | | |
| YFV_17D.CAA27332.0 | 166 | polyprotein precursor | individual (2.0) | ectoM silent mutation | | |
| Yellow fever virus - -Pasteur 17D-204 yellow fever vaccine | YFV_IMAP.CAB37419.0 | 876 | polyprotein | individual (2.0) | NS3_pro_YFV_58.1 | |
| Yellow fever virus - ASIBI | YFV_WT.AAT58050.0 | 165 | polyprotein | individual (2.0) | ectoM, silent mutation | |
| Zaire ebolavirus - Mayinga | ZEBOV-May.AAD14590.3 | 317 | nucleoprotein | individual (2.0) | NP D3 | |
| ZEBOV-May.AAD14590.2 | 316 | nucleoprotein | individual (2.0) | NP D1 | | |
| ZEBOV-May.AAD14590.1 | 315 | nucleoprotein | individual (2.0) | NP D1 | | |
| ZEBOV-May.AAD14590.0 | 314 | nucleoprotein | individual (2.0) | NP | | |
| ZEBOV-May.AAD14588.2 | 191 | VP24 | electronic (0.0) | |||
| ZEBOV-May.AAD14588.1 | 190 | VP24 | individual (2.0) | | ||
| ZEBOV-May.AAD14588.0 | 189 | VP24 | individual (2.0) | | ||
| ZEBOV-May.AAD14582.0 | 887 | VP35 | electronic (0.0) |